|
ybdG
|
| |
| Information
for ybdG, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
601182-602558
|
+
|
CDS
|
|
|
phenylalanine-specific transport system
|
|
602639-603886
|
-
|
CDS
|
ybdG
|
|
putative transport
|
|
603994-604647
|
-
|
CDS
|
|
|
oxygen-insensitive NAD(P)H nitroreductase
|
|
| |
Reported regulatory
sites for ybdG:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.085
|
603953-603976 R
|
gggca TCTGCCCGGCTATTTCCTCTCAGA ttctc
|
-
|
0
|
-
|
|
|
|
|
1.335
|
603920-603943 R
|
cctga TTTGCATAACCCTGTTTCAGCCGT catca
|
-
|
0
|
-
|
|
|
|
|
1.132
|
603907-603927 R
|
ctgtt TCAGCCGTCATCATAGGCTGC tgttg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|