|
ybdS
|
| |
| Information
for ybdS, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
643420-644226
|
-
|
CDS
|
|
|
RNase I; cleaves phosphodiester bond between any two nucleotides
|
|
644340-645803
|
-
|
CDS
|
ybdS
|
|
putative a membrane protein
|
|
645854-646732
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for ybdS:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.317
|
645812-645833 R
|
ataaa TTTGGAAATATTAATTTTCGGA gaacc
|
-
|
0
|
-
|
|
|
|
|
0.502
|
645834-645853 R
|
tttaa TTATTTAAGCACTTGATAAA tttgg
|
-
|
0
|
-
|
|
-
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.59
|
|
p=0.05
|
6.45
|
|
p=0.1
|
5.76
|
|
p=0.2
|
5.04
|
|
|