ybeD
 
Information for ybeD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
660860-661435
-
CDS
protein of lipoate biosynthesis
661602-661865
-
CDS
ybeD
orf; hypothetical protein
661975-663186
-
CDS
D-alanyl-D-alanine carboxypeptidase; fraction A; penicillin-binding protein 5
 
Reported regulatory sites for ybeD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.635
661897-661918 R
aaaaa ACTCCCGCCTTCTGGCGGGAGT tgcta
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.135
661954-661975 R
ggtta AAAATTAAACACTTGAAAGTGT aattt
-
0
-
2.054
661936-661952 R
gtgta ATTTCCGTCCCCATATA ctaag
-
0
-
 
Critical MAP values:
p=0.01
6.03
p=0.05
4.63
p=0.1
3.98
p=0.2
3.37

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