|
yeaF
|
| |
| Information
for yeaF, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1862806-1863660
|
-
|
CDS
|
|
|
putative an aldehyde reductase
|
|
1863750-1864496
|
-
|
CDS
|
yeaF
|
|
orf; hypothetical protein
|
|
1864932-1866866
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for yeaF:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.861
|
1864871-1864894 R
|
taaga GCCGTTCATATGAATAGTAGAGGC tcccg
|
-
|
0
|
-
|
|
|
|
|
3.116
|
1864695-1864714 R
|
tttca ATGGCATATCAACAACTCAT ccata
|
-
|
0
|
-
|
|
|
|
|
3.116
|
1864673-1864692 R
|
catcc ATAAATTTTGCATAATTAAT gtaaa
|
-
|
0
|
-
|
|
|
|
|
2.951
|
1864587-1864604 R
|
cagga AAATTAAACAGTTACTTT aaaaa
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|