|
yfcE
|
| |
| Information
for yfcE, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2416654-2417196
|
-
|
CDS
|
|
|
putative regulator
|
|
2417254-2417808
|
-
|
CDS
|
yfcE
|
|
orf; hypothetical protein
|
|
2417861-2418505
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for yfcE:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.381
|
2417835-2417851 R
|
aacga CAGAATCCAGTATCATA gctta
|
-
|
0
|
-
|
|
|
|
|
1.162
|
2417811-2417827 R
|
ttacg TTTTTTCGACGAGGAGT gagtg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.66
|
|
p=0.05
|
5.31
|
|
p=0.1
|
4.59
|
|
p=0.2
|
3.95
|
|
|