ygcA
 
Information for ygcA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2909439-2911673
-
CDS
(p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor
2911721-2913022
-
CDS
ygcA
putative enzyme
2913079-2915835
+
CDS
sensor-regulator; activates OmpR by phophorylation
 
Reported regulatory sites for ygcA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.307
2913060-2913076 R
catgg AGTTCCGTTATGGGACA attaa
-
0
-
2.825
2913033-2913053 R
ttaag GTCACACTGTTAAATTGAGAA agtct
-
0
-
 
Critical MAP values:
p=0.01
4.76
p=0.05
3.70
p=0.1
3.23
p=0.2
2.71

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