ygjD
 
Information for ygjD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3205665-3207128
+
CDS
orf; hypothetical protein
3207171-3208184
-
CDS
ygjD
putative O-sialoglycoprotein endopeptidase
3208422-3208637
+
CDS
30S ribosomal subunit protein S21
 
Reported regulatory sites for ygjD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
7.240
3208347-3208364 R
atttc AAAATGGTGCGGAATTTT actgc
-
0
-
7.240
3208307-3208324 R
tttgt AAAGCACCGCGGCCTTTT ttgaa
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.256
3208366-3208385 R
cgctg GCATCAACGCCAGCTTATTT caaaa
-
0
-
2.256
3208327-3208346 R
atttt ACTGCAATTGCTGCTGCTTT gtaaa
-
0
-
1.799
3208288-3208306 R
ctttt TTGAAAGGGACTTTTATAA gggtg
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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