|
yqcD
|
| |
| Information
for yqcD, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2922757-2923302
|
-
|
CDS
|
|
|
interacts with secY
|
|
2923370-2924218
|
+
|
CDS
|
yqcD
|
|
orf; hypothetical protein
|
|
2924330-2925694
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for yqcD:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.634
|
2923327-2923350
|
aacca GATACACTTGTCGTTTAGTTTATC tggtt
|
-
|
0
|
-
|
|
|
|
|
1.642
|
2923353-2923369
|
atctg GTTTATGACGGTGAAAC atgtc
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|