|
zipA
|
| |
| Information
for zipA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2526181-2528196
|
-
|
CDS
|
|
|
DNA ligase
|
|
2528267-2529253
|
-
|
CDS
|
zipA
|
|
cell division protein involved in FtsZ ring
|
|
2529483-2530244
|
+
|
CDS
|
|
|
required for sulfate transport
|
|
| |
Reported regulatory
sites for zipA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.640
|
2529277-2529293 R
|
aaatg TTTGCCGTGGTGGCAAG gtgtt
|
-
|
0
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.021
|
2529361-2529384 R
|
acagc AAAAAGCACGATTTCATCTATCTT tgtgc
|
-
|
0
|
-
|
|
|
|
|
2.436
|
2529310-2529333 R
|
cactt GCACTTGAGGTAATCGGCAAATAC tctta
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|