Welcome to the PhyloScan Version 1 Homepage

This is the Phyloscan Version 1 web application for locating intergenic regions with transcription factor binding sites in E. coli. (Phyloscan Version 2 will work with data you supply.) Please acknowledge the program authors on any publication of scientific results based in part on use of the program and cite the article in which the program was described

C. Steven Carmack, Lee Ann McCue, Lee A. Newberg, and Charles E. Lawrence (2007) PhyloScan: Identification of transcription factor binding sites using cross-species evidence. Algorithms for Molecular Biology, 2(1), article 1. PubMed: 17244358, doi: 10.1186/1748-7188-2-1 Supplementary Data Files.

This software was developed at the Center for Bioinformatics at the Wadsworth Center

The current local time is: Saturday, November 21, 2009 - 02:46:53 am
Browser is: CCBot/1.0 (+http://www.commoncrawl.org/bot.html)

Enter your email address (you will be contacted by email when your job completes)

Email Address:

Please enter motif model sequences:(click here for model format)
or click on Browse button to upload a motif model file

Assume motif model is palindromic (details)
pvalue used for initial screening of TBFS sites
qvalue cutoff for reporting significant results
Best site weight Second best site weight

Related Species to scan:
Yersinia pestis CO92 (NC_003143)
Haemophilus influenzae Rd (NC_000907)
Vibrio cholerae El Tor (NC_002505 and NC_002506)
Shewanella oneidensis MR-1 (NC_004347 and NC_004349)
Pseudomonas aeruginosa PA01 (NC_002516)