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E. coli
Bayesweb
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Sunday September 5, 2010
Optional: e-mail notification of results to:
(e-mail addresses are not used for any other purpose)
Paste in a Newick format
phylogentic tree
:
Or upload a file containing a Newick format tree:
Select a
format
for the
promoter sequences
:
Clustal W
MAF
Nexus
PHYLIP (interleaved)
POA
Stockholm
Want more formats?
Paste in aligned promoter sequences to be scanned:
Or
click here
to use the 2 MB
Carmack et al. (2007)
data set. (May take a few seconds each to load, clear, and submit.)
Or upload a multi-species alignment file:
Select a
format
for the
motif model
:
Clustal W
FASTA
MAF
Nexus
PHYLIP (interleaved)
POA
Stockholm
Paste in the motif model:
Or
click here
for motif model databases.
Or upload a file containing a motif model:
Motif model is
palindromic
Fragmentation mask
of motif model ('*' means position is included and '.' means position is ignored)
p-value cutoff
used for initial screening of transcription factor binding sites
q-value cutoff
for reporting significant results
Enter
site rank weights
as space separated numbers:
0.9 0.1
Phyloscan v2.2
- Wadsworth Center Bioinformatics
