phyloscan logo software for locating sequence motifs in intergenic regions
Home Help E. coli Bayesweb Wadsworth Contact About Friday November 20, 2009
Please fill in the form and press the Submit button below
E-mail notification of results to:
(e-mail addresses are not used for any other purpose)
Paste in a Newick format phylogentic tree :



Or upload a file containing a Newick format tree:

Paste in aligned promoter sequences to be scanned in MAF format:


Or upload a multi-species alignment file in MAF format:

Paste in a motif model in MAF format:



Or upload a file containing a motif model:

Motif model is palindromic
Fragmentation mask of motif model ('*' means position is included and '.' means position is ignored)
p-value cutoff used for initial screening of transcription factor binding sites
q-value cutoff for reporting significant results
Enter site rank weights as space separated numbers:



Phyloscan 2.0 - Wadsworth Bioinformatics Center